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» Efficient Haplotype Inference with Answer Set Programming
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JAR
2007
72views more  JAR 2007»
13 years 7 months ago
Inferring Phylogenetic Trees Using Answer Set Programming
We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to u...
Daniel R. Brooks, Esra Erdem, Selim T. Erdogan, Ja...
BMCBI
2007
165views more  BMCBI 2007»
13 years 7 months ago
Direct maximum parsimony phylogeny reconstruction from genotype data
Background: Maximum parsimony phylogenetic tree reconstruction from genetic variation data is a fundamental problem in computational genetics with many practical applications in p...
Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ra...
LPNMR
2009
Springer
14 years 3 days ago
PHYLO-ASP: Phylogenetic Systematics with Answer Set Programming
This note summarizes the use of Answer Set Programming to solve various computational problems to infer phylogenetic trees and phylogenetic networks, and discusses its applicabilit...
Esra Erdem
ICSE
1997
IEEE-ACM
13 years 11 months ago
Lackwit: A Program Understanding Tool Based on Type Inference
By determining, statically, where the structure of a program requires sets of variables to share a common tation, we can identify abstract data types, detect ion violations, find ...
Robert O'Callahan, Daniel Jackson
DKE
2010
167views more  DKE 2010»
13 years 7 months ago
The consistency extractor system: Answer set programs for consistent query answering in databases
We describe the Consistency Extractor System (ConsEx) that computes consistent answers to Datalog queries with negation posed to relational databases that may be inconsistent with...
Mónica Caniupán Marileo, Leopoldo E....