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CLUSTER
2001
IEEE
13 years 11 months ago
Parallel Standard Cell Placement on a Cluster of Workstations
In this paper we report experiences on a parallel implementation of a standard cell placement algorithm on a cluster of myrinet connected PCs. The proposed algorithm is based on a...
Faris H. Khundakjie, Patrick H. Madden, Nael B. Ab...
LCPC
1994
Springer
14 years 2 days ago
Optimizing Array Distributions in Data-Parallel Programs
Data parallel programs are sensitive to the distribution of data across processor nodes. We formulate the reduction of inter-node communication as an optimization on a colored gra...
Krishna Kunchithapadam, Barton P. Miller
RECOMB
2006
Springer
14 years 8 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
CVPR
2008
IEEE
14 years 10 months ago
Joint data alignment up to (lossy) transformations
Joint data alignment is often regarded as a data simplification process. This idea is powerful and general, but raises two delicate issues. First, one must make sure that the usef...
Andrea Vedaldi, Gregorio Guidi, Stefano Soatto
HPCC
2009
Springer
14 years 18 days ago
Load Scheduling Strategies for Parallel DNA Sequencing Applications
This paper studies a load scheduling strategy with nearoptimal processing time leveraging the computational characteristics of parallel DNA sequence alignment algorithms, specific...
Sudha Gunturu, Xiaolin Li, Laurence Tianruo Yang