In this paper we report experiences on a parallel implementation of a standard cell placement algorithm on a cluster of myrinet connected PCs. The proposed algorithm is based on a...
Faris H. Khundakjie, Patrick H. Madden, Nael B. Ab...
Data parallel programs are sensitive to the distribution of data across processor nodes. We formulate the reduction of inter-node communication as an optimization on a colored gra...
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Joint data alignment is often regarded as a data simplification process. This idea is powerful and general, but raises two delicate issues. First, one must make sure that the usef...
This paper studies a load scheduling strategy with nearoptimal processing time leveraging the computational characteristics of parallel DNA sequence alignment algorithms, specific...