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ISPDC
2005
IEEE
14 years 1 months ago
New Challenges in Parallel Optimization
: Optimization is a healthy field targeted to find efficient solutions and algorithms to solve problems either in the academia and the industry. As the solved problems became harde...
Enrique Alba
EUC
2006
Springer
13 years 11 months ago
Optimizing Scheduling Stability for Runtime Data Alignment
Runtime data alignment has been paid attention recently since it can allocate data segment to processors dynamically according to applications' requirement. One of the key opt...
Ching-Hsien Hsu, Chao-Yang Lan, Shih-Chang Chen
RECOMB
2009
Springer
14 years 8 months ago
Learning Models for Aligning Protein Sequences with Predicted Secondary Structure
Accurately aligning distant protein sequences is notoriously difficult. A recent approach to improving alignment accuracy is to use additional information such as predicted seconda...
Eagu Kim, Travis J. Wheeler, John D. Kececioglu
PROCEDIA
2010
138views more  PROCEDIA 2010»
13 years 2 months ago
Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics
Currently several computational problems require high processing power to handle huge amounts of data, although underlying core algorithms appear to be rather simple. Especially i...
Lars Wienbrandt, Stefan Baumgart, Jost Bissel, Car...
AAAI
2000
13 years 9 months ago
Divide-and-Conquer Frontier Search Applied to Optimal Sequence Alignment
We present a new algorithm that reduces the space complexity of heuristic search. It is most effective for problem spaces that grow polynomially with problem size, but contain lar...
Richard E. Korf, Weixiong Zhang