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KDD
2008
ACM
147views Data Mining» more  KDD 2008»
14 years 7 months ago
Extracting shared subspace for multi-label classification
Multi-label problems arise in various domains such as multitopic document categorization and protein function prediction. One natural way to deal with such problems is to construc...
Shuiwang Ji, Lei Tang, Shipeng Yu, Jieping Ye
BMCBI
2007
197views more  BMCBI 2007»
13 years 7 months ago
Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
Background: Boolean network (BN) modeling is a commonly used method for constructing gene regulatory networks from time series microarray data. However, its major drawback is that...
Haseong Kim, Jae K. Lee, Taesung Park
ICDE
2005
IEEE
139views Database» more  ICDE 2005»
14 years 8 months ago
Compressing Bitmap Indices by Data Reorganization
Many scientific applications generate massive volumes of data through observations or computer simulations, bringing up the need for effective indexing methods for efficient stora...
Ali Pinar, Tao Tao, Hakan Ferhatosmanoglu
BMCBI
2010
150views more  BMCBI 2010»
13 years 7 months ago
AMS 3.0: prediction of post-translational modifications
Background: We present here the recent update of AMS algorithm for identification of post-translational modification (PTM) sites in proteins based only on sequence information, us...
Subhadip Basu, Dariusz Plewczynski
BMCBI
2005
306views more  BMCBI 2005»
13 years 7 months ago
A method for aligning RNA secondary structures and its application to RNA motif detection
Background: Alignment of RNA secondary structures is important in studying functional RNA motifs. In recent years, much progress has been made in RNA motif finding and structure a...
Jianghui Liu, Jason Tsong-Li Wang, Jun Hu, Bin Tia...