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BMCBI
2007
156views more  BMCBI 2007»
13 years 6 months ago
Predictive modeling of plant messenger RNA polyadenylation sites
Background: One of the essential processing events during pre-mRNA maturation is the posttranscriptional addition of a polyadenine [poly(A)] tail. The 3'-end poly(A) track pr...
Guoli Ji, Jianti Zheng, Yingjia Shen, Xiaohui Wu, ...
JCB
2007
136views more  JCB 2007»
13 years 6 months ago
A Structure-Based Flexible Search Method for Motifs in RNA
The discovery of non-coding RNA (ncRNA) motifs and their role in regulating gene expression has recently attracted considerable attention. The goal is to discover these motifs in ...
Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny...
BMCBI
2005
143views more  BMCBI 2005»
13 years 6 months ago
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
Background: In expressed sequence tag (EST) sequencing, we are often interested in how many genes we can capture in an EST sample of a targeted size. This information provides ins...
Ji-Ping Z. Wang, Bruce G. Lindsay 0002, Liying Cui...
BMCBI
2006
103views more  BMCBI 2006»
13 years 6 months ago
Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequili
Background: The discovery of cis-regulatory motifs still remains a challenging task even though the number of sequenced genomes is constantly growing. Computational analyses using...
Kenneth W. Berendzen, Kurt Stüber, Klaus Hart...
ICDM
2008
IEEE
137views Data Mining» more  ICDM 2008»
14 years 1 months ago
Stream Sequential Pattern Mining with Precise Error Bounds
Sequential pattern mining is an interesting data mining problem with many real-world applications. This problem has been studied extensively in static databases. However, in recen...
Luiz F. Mendes, Bolin Ding, Jiawei Han