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» Efficient computation of absent words in genomic sequences
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JCB
2007
94views more  JCB 2007»
13 years 8 months ago
A Quantile Method for Sizing Optical Maps
Optical mapping is an integrated system for the analysis of single DNA molecules. It constructs restriction maps (noted as “optical map”) from individual DNA molecules present...
Haifeng Li, Anton Valouev, David C. Schwartz, Mich...
BMCBI
2002
120views more  BMCBI 2002»
13 years 8 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
BMCBI
2008
95views more  BMCBI 2008»
13 years 8 months ago
Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
Background: Despite significant improvements in computational annotation of genomes, sequences of abnormal, incomplete or incorrectly predicted genes and proteins remain abundant ...
Alinda Nagy, Hédi Hegyi, Krisztina Farkas, ...
DCC
2004
IEEE
14 years 8 months ago
Register Synthesis for Algebraic Feedback Shift Registers Based on Non-Primes
In this paper, we describe a solution to the register synthesis problem for a class of sequence generators known as Algebraic Feedback Shift Registers. These registers are based o...
Andrew Klapper, Jinzhong Xu
BMCBI
2008
169views more  BMCBI 2008»
13 years 8 months ago
CompMoby: Comparative MobyDick for detection of cis-regulatory motifs
Background: The regulation of gene expression is complex and occurs at many levels, including transcriptional and post-transcriptional, in metazoans. Transcriptional regulation is...
Christina Chaivorapol, Collin Melton, Grace Wei, R...