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» Efficient computation of absent words in genomic sequences
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ALMOB
2008
95views more  ALMOB 2008»
13 years 10 months ago
A stitch in time: Efficient computation of genomic DNA melting bubbles
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
Eivind Tøstesen
RECOMB
2005
Springer
14 years 10 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
BMCBI
2008
131views more  BMCBI 2008»
13 years 10 months ago
CoCoNUT: an efficient system for the comparison and analysis of genomes
Background: Comparative genomics is the analysis and comparison of genomes from different species. This area of research is driven by the large number of sequenced genomes and hea...
Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohl...
BMCBI
2007
99views more  BMCBI 2007»
13 years 9 months ago
Towards validating the hypothesis of phylogenetic profiling
Background: As the number of fully sequenced genome increases, the need is greater for bioinformatics to predict or annotate genes of a newly sequenced genome. Ever since Eisenber...
Raja Loganantharaj, Mazen Atwi
BIOCOMP
2006
13 years 11 months ago
Fast Dictionary Lookup in Genomic Information Retrieval
Indexing and retrieval techniques for homology searching of genomic databases are increasingly important as the search tools are facing great challenges of rapid growth in sequence...
Simon M. C. Yuen, Fu-Lai Chung, Robert Wing Pong L...