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BMCBI
2008
211views more  BMCBI 2008»
13 years 9 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
SAC
2006
ACM
13 years 8 months ago
Efficient interactive configuration of unbounded modular systems
Interactive configuration guides a user searching through a large combinatorial space of solutions to a system of constraints. We investigate a class of very expressive underlying...
Erik Roland van der Meer, Andrzej Wasowski, Henrik...
BMCBI
2002
131views more  BMCBI 2002»
13 years 8 months ago
Efficient Boolean implementation of universal sequence maps (bUSM)
Background: Recently, Almeida and Vinga offered a new approach for the representation of arbitrary discrete sequences, referred to as Universal Sequence Maps (USM), and discussed ...
John Schwacke, Jonas S. Almeida
TKDE
2010
218views more  TKDE 2010»
13 years 3 months ago
LIGHT: A Query-Efficient Yet Low-Maintenance Indexing Scheme over DHTs
DHT is a widely used building block for scalable P2P systems. However, as uniform hashing employed in DHTs destroys data locality, it is not a trivial task to support complex queri...
Yuzhe Tang, Shuigeng Zhou, Jianliang Xu
ATAL
2010
Springer
13 years 10 months ago
Exploiting scale invariant dynamics for efficient information propagation in large teams
Large heterogeneous teams will often be in situations where sensor data that is uncertain and conflicting is shared across a peer-to-peer network. Not every team member will have ...
Robin Glinton, Paul Scerri, Katia P. Sycara