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» Efficient drawing of RNA secondary structure
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BIB
2011
13 years 3 months ago
Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction
Programs for RNA mutational analysis that are structure-based and rely on secondary structure prediction have been developed and expanded in the past several years. They can be us...
Danny Barash, Alexander Churkin
JUCS
2006
141views more  JUCS 2006»
13 years 8 months ago
Constraint Based Methods for Biological Sequence Analysis
: The need for processing biological information is rapidly growing, owing to the masses of new information in digital form being produced at this time. Old methodologies for proce...
Maryam Bavarian, Verónica Dahl
CPM
2006
Springer
143views Combinatorics» more  CPM 2006»
14 years 7 days ago
Algorithms for Finding a Most Similar Subforest
Given an ordered labeled forest F ("the target forest") and an ordered labeled forest G ("the pattern forest"), the most similar subforest problem is to find a ...
Jesper Jansson, Zeshan Peng
BMCBI
2007
114views more  BMCBI 2007»
13 years 8 months ago
Large scale statistical inference of signaling pathways from RNAi and microarray data
Background: The advent of RNA interference techniques enables the selective silencing of biologically interesting genes in an efficient way. In combination with DNA microarray tec...
Holger Fröhlich, Mark Fellmann, Holger Sü...
BMCBI
2010
112views more  BMCBI 2010»
13 years 8 months ago
Computational identification of rare codons of Escherichia coli based on codon pairs preference
Background: Codon bias is believed to play an important role in the control of gene expression. In Escherichia coli, some rare codons, which can limit the expression level of exog...
Xianming Wu, Songfeng Wu, Dong Li, Jiyang Zhang, L...