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SSDBM
2010
IEEE
220views Database» more  SSDBM 2010»
13 years 12 months ago
Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
Astrid Rheinländer, Martin Knobloch, Nicky Ho...
PODS
2006
ACM
216views Database» more  PODS 2006»
14 years 7 months ago
Cache-oblivious string B-trees
B-trees are the data structure of choice for maintaining searchable data on disk. However, B-trees perform suboptimally ? when keys are long or of variable length, ? when keys are...
Michael A. Bender, Martin Farach-Colton, Bradley C...
SIGMOD
2008
ACM
100views Database» more  SIGMOD 2008»
13 years 7 months ago
Incorporating string transformations in record matching
Today's record matching infrastructure does not allow a flexible way to account for synonyms such as "Robert" and "Bob" which refer to the same name, and ...
Arvind Arasu, Surajit Chaudhuri, Kris Ganjam, Ragh...
CPM
2007
Springer
134views Combinatorics» more  CPM 2007»
13 years 11 months ago
Efficient Computation of Substring Equivalence Classes with Suffix Arrays
This paper considers enumeration of substring equivalence classes introduced by Blumer et al. [1]. They used the equivalence classes to define an index structure called compact dir...
Kazuyuki Narisawa, Shunsuke Inenaga, Hideo Bannai,...
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
13 years 11 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya