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DEBU
2008
125views more  DEBU 2008»
13 years 8 months ago
Querying XML in Timber
In this paper, we describe the TIMBER XML database system implemented at University of Michigan. TIMBER was one of the first native XML database systems, designed from the ground ...
Yuqing Wu, Stelios Paparizos, H. V. Jagadish
BIRD
2007
Springer
128views Bioinformatics» more  BIRD 2007»
14 years 2 months ago
Efficient and Scalable Indexing Techniques for Biological Sequence Data
We investigate indexing techniques for sequence data, crucial in a wide variety of applications, where efficient, scalable, and versatile search algorithms are required. Recent res...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
BMCBI
2010
137views more  BMCBI 2010»
13 years 8 months ago
TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses
Background: Today it is common to apply multiple potentially conflicting data sources to a given phylogenetic problem. At the same time, several different inference techniques are...
Ben C. Stöver, Kai F. Müller
BMCBI
2007
100views more  BMCBI 2007»
13 years 8 months ago
SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML)
Background: The need to build a tool to facilitate the quick creation and editing of models encoded in the Systems Biology Markup language (SBML) has been growing with the number ...
Nicolas Rodriguez, Marco Donizelli, Nicolas Le Nov...
SDM
2008
SIAM
256views Data Mining» more  SDM 2008»
13 years 10 months ago
Graph Mining with Variational Dirichlet Process Mixture Models
Graph data such as chemical compounds and XML documents are getting more common in many application domains. A main difficulty of graph data processing lies in the intrinsic high ...
Koji Tsuda, Kenichi Kurihara