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» Efficient protein alignment algorithm for protein search
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ML
2011
ACM
308views Machine Learning» more  ML 2011»
13 years 4 months ago
Relational information gain
Abstract. Type Extension Trees (TET) have been recently introduced as an expressive representation language allowing to encode complex combinatorial features of relational entities...
Marco Lippi, Manfred Jaeger, Paolo Frasconi, Andre...
CORR
2010
Springer
173views Education» more  CORR 2010»
13 years 10 months ago
CONCISE: Compressed 'n' Composable Integer Set
Bit arrays, or bitmaps, are used to significantly speed up set operations in several areas, such as data warehousing, information retrieval, and data mining, to cite a few. Howeve...
Alessandro Colantonio, Roberto Di Pietro
BMCBI
2007
133views more  BMCBI 2007»
13 years 10 months ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja
SDM
2010
SIAM
181views Data Mining» more  SDM 2010»
13 years 11 months ago
A Compression Based Distance Measure for Texture
The analysis of texture is an important subroutine in application areas as diverse as biology, medicine, robotics, and forensic science. While the last three decades have seen ext...
Bilson J. L. Campana, Eamonn J. Keogh
BMCBI
2010
131views more  BMCBI 2010»
13 years 10 months ago
A comparison of approximation techniques for variance-based sensitivity analysis of biochemical reaction systems
Background: Sensitivity analysis is an indispensable tool for the analysis of complex systems. In a recent paper, we have introduced a thermodynamically consistent variance-based ...
Hong-Xuan Zhang, John Goutsias