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» Efficiently Mining Long Patterns from Databases
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BMCBI
2007
156views more  BMCBI 2007»
13 years 7 months ago
Predictive modeling of plant messenger RNA polyadenylation sites
Background: One of the essential processing events during pre-mRNA maturation is the posttranscriptional addition of a polyadenine [poly(A)] tail. The 3'-end poly(A) track pr...
Guoli Ji, Jianti Zheng, Yingjia Shen, Xiaohui Wu, ...
CIKM
2006
Springer
13 years 11 months ago
Heuristic containment check of partial tree-pattern queries in the presence of index graphs
The wide adoption of XML has increased the interest of the database community on tree-structured data management techniques. Querying capabilities are provided through tree-patter...
Dimitri Theodoratos, Stefanos Souldatos, Theodore ...
BMCBI
2008
123views more  BMCBI 2008»
13 years 7 months ago
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
BMCBI
2008
163views more  BMCBI 2008»
13 years 7 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
DEXA
2007
Springer
154views Database» more  DEXA 2007»
14 years 1 months ago
Beyond Lazy XML Parsing
XML has become the standard format for data representation and exchange in domains ranging from Web to desktop applications. However, wide adoption of XML is hindered by inefficien...
Fernando Farfán, Vagelis Hristidis, Raju Ra...