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CONCUR
2010
Springer
13 years 11 months ago
Simulation Distances
Boolean notions of correctness are formalized by preorders on systems. Quantitative measures of correctness can be formalized by realvalued distance functions between systems, wher...
Pavol Cerný, Thomas A. Henzinger, Arjun Rad...
CSL
2010
Springer
13 years 11 months ago
From Feasible Proofs to Feasible Computations
We shall discuss several situations in which it is possible to extract from a proof, be it a proof in a first-order theory or a propositional proof, some feasible computational inf...
Jan Krajícek
BMCBI
2007
125views more  BMCBI 2007»
13 years 10 months ago
Statistical tests to compare motif count exceptionalities
Background: Finding over- or under-represented motifs in biological sequences is now a common task in genomics. Thanks to p-value calculation for motif counts, exceptional motifs ...
Stéphane Robin, Sophie Schbath, Vincent Van...
BMCBI
2006
172views more  BMCBI 2006»
13 years 10 months ago
Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information
Background: The majority of peptide bonds in proteins are found to occur in the trans conformation. However, for proline residues, a considerable fraction of Prolyl peptide bonds ...
Jiangning Song, Kevin Burrage, Zheng Yuan, Thomas ...
BMCBI
2006
128views more  BMCBI 2006»
13 years 10 months ago
Comparative assessment of performance and genome dependence among phylogenetic profiling methods
Background: The rapidly increasing speed with which genome sequence data can be generated will be accompanied by an exponential increase in the number of sequenced eukaryotes. Wit...
Evan S. Snitkin, Adam M. Gustafson, Joseph C. Mell...