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» Error Correcting Sequence and Projective De Bruijn Graph
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GC
2008
Springer
13 years 11 months ago
Error Correcting Sequence and Projective De Bruijn Graph
Mariko Hagita, Makoto Matsumoto, Fumio Natsu, Yuki...
BMCBI
2010
189views more  BMCBI 2010»
13 years 11 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
MICCAI
2003
Springer
14 years 11 months ago
Automated Segmentation of Abdominal Aortic Aneurysms in Multi-spectral MR Images
Abstract. An automated method for segmenting the outer boundary of abdominal aortic aneurysms in MR images is presented. The method is based on the well known Active Shape Models (...
Marleen de Bruijne, Bram van Ginneken, Lambertus W...
BMCBI
2010
183views more  BMCBI 2010»
13 years 11 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
BMCBI
2007
166views more  BMCBI 2007»
13 years 11 months ago
Data handling strategies for high throughput pyrosequencers
Background: New high throughput pyrosequencers such as the 454 Life Sciences GS 20 are capable of massively parallelizing DNA sequencing providing an unprecedented rate of output ...
Gabriele A. Trombetti, Raoul J. P. Bonnal, Ermanno...