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PR
2007
189views more  PR 2007»
13 years 8 months ago
Information cut for clustering using a gradient descent approach
We introduce a new graph cut for clustering which we call the Information Cut. It is derived using Parzen windowing to estimate an information theoretic distance measure between p...
Robert Jenssen, Deniz Erdogmus, Kenneth E. Hild II...
TAMC
2007
Springer
14 years 2 months ago
On Deciding Deep Holes of Reed-Solomon Codes
For generalized Reed-Solomon codes, it has been proved [7] that the problem of determining if a received word is a deep hole is coNP-complete. The reduction relies on the fact that...
Qi Cheng, Elizabeth Murray
CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
14 years 2 months ago
ssahaSNP A Polymorphism Detection Tool on a Whole Genome Scale
We present a software package which can detect homozygous SNPs and indels on a eukaryotic genome scale from millions of shotgun reads. Matching seeds of a few kmer words are found...
Zemin Ning, Mario Cáccamo, James C. Mulliki...
JCB
2007
94views more  JCB 2007»
13 years 8 months ago
A Quantile Method for Sizing Optical Maps
Optical mapping is an integrated system for the analysis of single DNA molecules. It constructs restriction maps (noted as “optical map”) from individual DNA molecules present...
Haifeng Li, Anton Valouev, David C. Schwartz, Mich...
SIAMIS
2010
102views more  SIAMIS 2010»
13 years 3 months ago
Cross Correlation and Deconvolution of Noise Signals in Randomly Layered Media
It is known that cross correlation of waves generated by noise sources, propagating in an unknown medium, and recorded by a sensor array, can provide information about the medium. ...
Josselin Garnier, Knut Sølna