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» Evaluation Measures of Multiple Sequence Alignments
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CIBCB
2007
IEEE
14 years 2 months ago
An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations
— Rearrangements of genes and other syntenic blocks have become a topic of intensive study by phylogenists, comparative genomicists, and computational biologists: they are a feat...
Moulik Kothari, Bernard M. E. Moret
BMCBI
2008
145views more  BMCBI 2008»
13 years 7 months ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...
BMCBI
2005
73views more  BMCBI 2005»
13 years 7 months ago
Evaluation of Glycine max mRNA clusters
Background: Clustering the ESTs from a large dataset representing a single species is a convenient starting point for a number of investigations into gene discovery, genome evolut...
Ronald L. Frank, Fikret Erçal
PAMI
2008
146views more  PAMI 2008»
13 years 7 months ago
Video Event Recognition Using Kernel Methods with Multilevel Temporal Alignment
In this work, we systematically study the problem of event recognition in unconstrained news video sequences. We adopt the discriminative kernel-based method for which video clip s...
Dong Xu, Shih-Fu Chang
WEBI
2009
Springer
14 years 2 months ago
Social Semantics and Its Evaluation by Means of Semantic Relatedness and Open Topic Models
—This paper presents an approach using social semantics for the task of topic labelling by means of Open Topic Models. Our approach utilizes a social ontology to create an alignm...
Ulli Waltinger, Alexander Mehler