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DATE
2009
IEEE
159views Hardware» more  DATE 2009»
14 years 2 months ago
Design and implementation of a database filter for BLAST acceleration
— BLAST is a very popular Computational Biology algorithm. Since it is computationally expensive it is a natural target for acceleration research, and many reconfigurable archite...
Panagiotis Afratis, Constantinos Galanakis, Euripi...
EUROGP
2008
Springer
128views Optimization» more  EUROGP 2008»
13 years 9 months ago
Hardware Accelerators for Cartesian Genetic Programming
A new class of FPGA-based accelerators is presented for Cartesian Genetic Programming (CGP). The accelerators contain a genetic engine which is reused in all applications. Candidat...
Zdenek Vasícek, Lukás Sekanina
ICPP
2008
IEEE
14 years 2 months ago
Resource Allocation for Distributed Streaming Applications
—We consider resource allocation for distributed streaming applications running in a grid environment, where continuously streaming data needs to be aggregated and processed to p...
Qian Zhu, Gagan Agrawal
ICDE
2011
IEEE
263views Database» more  ICDE 2011»
12 years 11 months ago
Adding regular expressions to graph reachability and pattern queries
—It is increasingly common to find graphs in which edges bear different types, indicating a variety of relationships. For such graphs we propose a class of reachability queries ...
Wenfei Fan, Jianzhong Li, Shuai Ma, Nan Tang, Ying...
ARC
2007
Springer
140views Hardware» more  ARC 2007»
13 years 11 months ago
Reconfigurable Computing for Accelerating Protein Folding Simulations
Abstract. This paper presents a methodology for the design of a reconfigurable computing system applied to a complex problem in molecular Biology: the protein folding problem. An e...
Nilton B. Armstrong, Heitor S. Lopes, Carlos R. Er...