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BMCBI
2008
126views more  BMCBI 2008»
13 years 6 months ago
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
Katerina Kechris, Hao Li
BMCBI
2007
148views more  BMCBI 2007»
13 years 6 months ago
Blast sampling for structural and functional analyses
Background: The post-genomic era is characterised by a torrent of biological information flooding the public databases. As a direct consequence, similarity searches starting with ...
Anne Friedrich, Raymond Ripp, Nicolas Garnier, Emm...
DIS
2005
Springer
14 years 7 days ago
The Arrowsmith Project: 2005 Status Report
In the 1980s, Don Swanson proposed the concept of “undiscovered public knowledge,” and published several examples in which two disparate literatures (i.e., sets of articles hav...
Neil R. Smalheiser
IPPS
2007
IEEE
14 years 1 months ago
Optimizing Sorting with Machine Learning Algorithms
The growing complexity of modern processors has made the development of highly efficient code increasingly difficult. Manually developing highly efficient code is usually expen...
Xiaoming Li, María Jesús Garzar&aacu...
GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
14 years 7 days ago
Evolving petri nets to represent metabolic pathways
Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
Jeremiah Nummela, Bryant A. Julstrom