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ESA
2008
Springer
106views Algorithms» more  ESA 2008»
13 years 11 months ago
An Experimental Analysis of Robinson-Foulds Distance Matrix Algorithms
In this paper, we study two fast algorithms--HashRF and PGM-Hashed--for computing the Robinson-Foulds (RF) distance matrix between a collection of evolutionary trees. The RF distan...
Seung-Jin Sul, Tiffani L. Williams
COCOON
2006
Springer
14 years 1 months ago
Reconstructing Evolution of Natural Languages: Complexity and Parameterized Algorithms
In a recent article, Nakhleh, Ringe and Warnow introduced perfect phylogenetic networks--a model of language evolution where languages do not evolve via clean speciation--and form...
Iyad A. Kanj, Luay Nakhleh, Ge Xia
GECCO
2006
Springer
127views Optimization» more  GECCO 2006»
14 years 1 months ago
Multiobjective genetic algorithms for multiscaling excited state direct dynamics in photochemistry
This paper studies the effectiveness of multiobjective genetic and evolutionary algorithms in multiscaling excited state direct dynamics in photochemistry via rapid reparameteriza...
Kumara Sastry, D. D. Johnson, Alexis L. Thompson, ...
BIOINFORMATICS
2002
100views more  BIOINFORMATICS 2002»
13 years 9 months ago
Optimal algorithms for local vertex quartet cleaning
Reconstructing evolutionary trees is an important problem in biology. A response to the computational intractability of most of the traditional criteria for inferring evolutionary...
Gianluca Della Vedova, Todd Wareham
ECAL
2001
Springer
14 years 1 months ago
Symbiotic Composition and Evolvability
Several of the Major Transitions in natural evolution, such as the symbiogenic origin of eukaryotes from prokaryotes, share the feature that existing entities became the components...
Richard A. Watson, Jordan B. Pollack