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» Experience with Distributed Programming in ORCA
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BMCBI
2010
132views more  BMCBI 2010»
13 years 9 months ago
Data structures and compression algorithms for high-throughput sequencing technologies
Background: High-throughput sequencing (HTS) technologies play important roles in the life sciences by allowing the rapid parallel sequencing of very large numbers of relatively s...
Kenny Daily, Paul Rigor, Scott Christley, Xiaohui ...
SIGCSE
2002
ACM
211views Education» more  SIGCSE 2002»
13 years 9 months ago
To java.net and beyond: teaching networking concepts using the Java networking API
This paper covers the use of Java and its API for developing networking programs in an undergraduate computer networks class. Through the use of TCP and UDP sockets provided in th...
Greg Gagne
ICDE
2001
IEEE
121views Database» more  ICDE 2001»
14 years 11 months ago
Integrating Semi-Join-Reducers into State of the Art Query Processors
Semi-join reducers were introduced in the late seventies as a means to reduce the communication costs of distributed database systems. Subsequent work in the eighties showed, howe...
Konrad Stocker, Donald Kossmann, Reinhard Braumand...
ICPP
2009
IEEE
14 years 4 months ago
Fine-grain Parallelism Using Multi-core, Cell/BE, and GPU Systems: Accelerating the Phylogenetic Likelihood Function
We are currently faced with the situation where applications have increasing computational demands and there is a wide selection of parallel processor systems. In this paper we fo...
Frederico Pratas, Pedro Trancoso, Alexandros Stama...
IPPS
2009
IEEE
14 years 4 months ago
Evaluating the use of GPUs in liver image segmentation and HMMER database searches
In this paper we present the results of parallelizing two life sciences applications, Markov random fieldsbased (MRF) liver segmentation and HMMER’s Viterbi algorithm, using GP...
John Paul Walters, Vidyananth Balu, Suryaprakash K...