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» Experiences with Modeling and Verification of Regulations
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RECOMB
2001
Springer
14 years 9 months ago
Context-specific Bayesian clustering for gene expression data
The recent growth in genomic data and measurements of genome-wide expression patterns allows us to apply computational tools to examine gene regulation by transcription factors. I...
Yoseph Barash, Nir Friedman
CDC
2010
IEEE
13 years 3 months ago
Tuning a synthetic in vitro oscillator using control-theoretic tools
Abstract-- This paper demonstrates the effectiveness of simple control-theoretic tools in generating simulation-guided experiments on a synthetic in vitro oscillator. A theoretical...
Christopher Sturk, Elisa Franco, Richard M. Murray
AMAST
2008
Springer
13 years 10 months ago
Towards an Efficient Implementation of Tree Automata Completion
Term Rewriting Systems (TRSs) are now commonly used as a modeling language for applications. In those rewriting based models, reachability analysis, i.e. proving or disproving that...
Emilie Balland, Yohan Boichut, Thomas Genet, Pierr...
BICOB
2009
Springer
13 years 6 months ago
A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets
We propose a two-step biclustering approach to mine co-regulation patterns of a given reference gene to discover other genes that function in a common biological process. Currently...
Doruk Bozdag, Jeffrey D. Parvin, Ümit V. &Cce...
MEMOCODE
2010
IEEE
13 years 6 months ago
Proving transaction and system-level properties of untimed SystemC TLM designs
Electronic System Level (ESL) design manages the complexity of todays systems by using abstract models. In this context Transaction Level Modeling (TLM) is state-of-theart for desc...
Daniel Große, Hoang M. Le, Rolf Drechsler