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» Explicit Parallel Structuring for Rule-Based Programming
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BMCBI
2004
123views more  BMCBI 2004»
13 years 7 months ago
A two-way interface between limited Systems Biology Markup Language and R
Background: Systems Biology Markup Language (SBML) is gaining broad usage as a standard for representing dynamical systems as data structures. The open source statistical programm...
Tomas Radivoyevitch
SCFBM
2008
92views more  SCFBM 2008»
13 years 7 months ago
CRANKITE: A fast polypeptide backbone conformation sampler
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
Alexei A. Podtelezhnikov, David L. Wild
CGO
2006
IEEE
14 years 1 months ago
Compiling for EDGE Architectures
Explicit Data Graph Execution (EDGE) architectures offer the possibility of high instruction-level parallelism with energy efficiency. In EDGE architectures, the compiler breaks ...
Aaron Smith, Jon Gibson, Bertrand A. Maher, Nichol...
OOPSLA
2005
Springer
14 years 29 days ago
X10: an object-oriented approach to non-uniform cluster computing
It is now well established that the device scaling predicted by Moore’s Law is no longer a viable option for increasing the clock frequency of future uniprocessor systems at the...
Philippe Charles, Christian Grothoff, Vijay A. Sar...
ICCD
2006
IEEE
97views Hardware» more  ICCD 2006»
14 years 4 months ago
Pesticide: Using SMT Processors to Improve Performance of Pointer Bug Detection
Pointer bugs associated with dynamically-allocated objects resulting in out-of-bounds memory access are an important class of software bugs. Because such bugs cannot be detected e...
Jin-Yi Wang, Yen-Shiang Shue, T. N. Vijaykumar, Sa...