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BMCBI
2005
106views more  BMCBI 2005»
13 years 10 months ago
A multistep bioinformatic approach detects putative regulatory elements in gene promoters
Background: Searching for approximate patterns in large promoter sequences frequently produces an exceedingly high numbers of results. Our aim was to exploit biological knowledge ...
Stefania Bortoluzzi, Alessandro Coppe, Andrea Biso...
NAR
2011
159views Computer Vision» more  NAR 2011»
13 years 1 months ago
SuperSweet - a resource on natural and artificial sweetening agents
A vast number of sweet tasting molecules are known, encompassing small compounds, carbohydrates, D-amino acids and large proteins. Carbohydrates play a particularly big role in hu...
Jessica Ahmed, Saskia Preissner, Mathias Dunkel, C...
ACTA
2008
88views more  ACTA 2008»
13 years 9 months ago
Weighted height of random trees
We consider a model of random trees similar to the split trees of Devroye [30] in which a set of items is recursively partitioned. Our model allows for more flexibility in the cho...
Nicolas Broutin, Luc Devroye, Erin McLeish
BMCBI
2008
101views more  BMCBI 2008»
13 years 11 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...
BMCBI
2006
91views more  BMCBI 2006»
13 years 11 months ago
In silico identification of putative promoter motifs of White Spot Syndrome Virus
Background: White Spot Syndrome Virus, a member of the virus family Nimaviridae, is a large dsDNA virus infecting shrimp and other crustacean species. Although limited information...
Hendrik Marks, Xin-Ying Ren, Hans Sandbrink, Mari&...