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BIOCOMP
2007
13 years 9 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...
Xuehui Li, Tamer Kahveci
ADBIS
2007
Springer
171views Database» more  ADBIS 2007»
14 years 2 months ago
Quete: Ontology-Based Query System for Distributed Sources
The exponential growth of the web and the extended use of database management systems in widely distributed information systems has brought to the fore the need for seamless interc...
Haridimos Kondylakis, Anastasia Analyti, Dimitris ...
ICDT
2003
ACM
91views Database» more  ICDT 2003»
14 years 1 months ago
Reformulation of XML Queries and Constraints
We state and solve the query reformulation problem for XML publishing in a general setting that allows mixed (XML and relational) storage for the proprietary data and exploits redu...
Alin Deutsch, Val Tannen
SIGMOD
2004
ACM
147views Database» more  SIGMOD 2004»
14 years 8 months ago
Robust Query Processing through Progressive Optimization
Virtually every commercial query optimizer chooses the best plan for a query using a cost model that relies heavily on accurate cardinality estimation. Cardinality estimation erro...
Volker Markl, Vijayshankar Raman, David E. Simmen,...
BMCBI
2007
135views more  BMCBI 2007»
13 years 8 months ago
Sequence similarity is more relevant than species specificity in probabilistic backtranslation
Background: Backtranslation is the process of decoding a sequence of amino acids into the corresponding codons. All synthetic gene design systems include a backtranslation module....
Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Al...