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» Exploiting purity for atomicity
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ASPLOS
2008
ACM
13 years 9 months ago
General and efficient locking without blocking
Standard concurrency control mechanisms offer a trade-off: Transactional memory approaches maximize concurrency, but suffer high overheads and cost for retrying in the case of act...
Yannis Smaragdakis, Anthony Kay, Reimer Behrends, ...
CASES
2005
ACM
13 years 9 months ago
Exploring the design space of LUT-based transparent accelerators
Instruction set customization accelerates the performance of applications by compressing the length of critical dependence paths and reducing the demands on processor resources. W...
Sami Yehia, Nathan Clark, Scott A. Mahlke, Kriszti...
BMCBI
2010
183views more  BMCBI 2010»
13 years 7 months ago
SING: Subgraph search In Non-homogeneous Graphs
Background: Finding the subgraphs of a graph database that are isomorphic to a given query graph has practical applications in several fields, from cheminformatics to image unders...
Raffaele Di Natale, Alfredo Ferro, Rosalba Giugno,...
BMCBI
2010
117views more  BMCBI 2010»
13 years 7 months ago
Beyond rotamers: a generative, probabilistic model of side chains in proteins
Background: Accurately covering the conformational space of amino acid side chains is essential for important applications such as protein design, docking and high resolution stru...
Tim Harder, Wouter Boomsma, Martin Paluszewski, Je...
BMCBI
2007
97views more  BMCBI 2007»
13 years 7 months ago
Relating destabilizing regions to known functional sites in proteins
Background: Most methods for predicting functional sites in protein 3D structures, rely on information on related proteins and cannot be applied to proteins with no known relative...
Benoit H. Dessailly, Marc F. Lensink, Shoshana J. ...