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ICML
2005
IEEE
14 years 8 months ago
Multi-class protein fold recognition using adaptive codes
We develop a novel multi-class classification method based on output codes for the problem of classifying a sequence of amino acids into one of many known protein structural class...
Eugene Ie, Jason Weston, William Stafford Noble, C...
ISCAPDCS
2003
13 years 9 months ago
Parallel Relative Debugging with Dynamic Data Structures
This paper discusses the use of “relative debugging” as a technique for locating errors in a program that has been ported or developed using evolutionary software engineering ...
David Abramson, Raphael A. Finkel, Donny Kurniawan...
BMCBI
2006
104views more  BMCBI 2006»
13 years 7 months ago
MANET: tracing evolution of protein architecture in metabolic networks
Background: Cellular metabolism can be characterized by networks of enzymatic reactions and transport processes capable of supporting cellular life. Our aim is to find evolutionar...
Hee Shin Kim, Jay E. Mittenthal, Gustavo Caetano-A...
BMCBI
2006
242views more  BMCBI 2006»
13 years 7 months ago
Predicting residue-wise contact orders in proteins by support vector regression
Background: The residue-wise contact order (RWCO) describes the sequence separations between the residues of interest and its contacting residues in a protein sequence. It is a ne...
Jiangning Song, Kevin Burrage
GECCO
2010
Springer
148views Optimization» more  GECCO 2010»
14 years 15 days ago
Guarding against premature convergence while accelerating evolutionary search
The fundamental dichotomy in evolutionary algorithms is that between exploration and exploitation. Recently, several algorithms [8, 9, 14, 16, 17, 20] have been introduced that gu...
Josh C. Bongard, Gregory S. Hornby