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    » Extensions to gene set enrichment
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    BMCBI
    2010
    101views more  BMCBI 2010»
    Enrichment of homologs in insignificant BLAST hits by co-complex network alignment
    13 years 10 months ago
    Enrichment of homologs in insignificant BLAST hits by co-complex network alignment
    Download  www.biomedcentral.com
    Background: Homology is a crucial concept in comparative genomics. The algorithm probably most widely used for homology detection in comparative genomics, is BLAST. Usually a stri...
    Like Fokkens, Sandra M. C. Botelho, Jos Boekhorst,...
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    NAR
    2007
    155views more  NAR 2007»
    AthaMap web tools for the analysis and identification of co-regulated genes
    13 years 9 months ago
    AthaMap web tools for the analysis and identification of co-regulated genes
    Download  www.athamap.de
    The AthaMap database generates a map of cisregulatory elements for the whole Arabidopsis thaliana genome. This database has been extended by new tools to identify common cis-regul...
    Claudia Galuschka, Martin Schindler, Lorenz Bü...
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    BMCBI
    2011
    242views Artificial Intelligence» more  BMCBI 2011»
    Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
    13 years 4 months ago
    Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
    Download  www.biomedcentral.com
    Background: In the last decades, microarray technology has spread, leading to a dramatic increase of publicly available datasets. The first statistical tools developed were focuse...
    Paolo G. V. Martini, Davide Risso, Gabriele Sales,...
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    JBI
    2011
    283views Bioinformatics» more  JBI 2011»
    Cross-product extensions of the Gene Ontology
    13 years 4 months ago
    Cross-product extensions of the Gene Ontology
    Download  precedings.nature.com
    The Gene Ontology is being normalized and extended to include computable logical definitions. These definitions are partitioned into mutually exclusive cross-product sets, many of...
    Christopher J. Mungall, Michael Bada, Tanya Z. Ber...
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    RECOMB
    2008
    Springer
    158views Computational Biology» more  RECOMB 2008»
    Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles
    14 years 10 months ago
    Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles
    Download  acgt.cs.tau.ac.il
    We present a method for identifying connected gene subnetworks significantly enriched for genes that are dysregulated in specimens of a disease. These subnetworks provide a signat...
    Igor Ulitsky, Richard M. Karp, Ron Shamir
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