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BMCBI
2002
126views more  BMCBI 2002»
13 years 9 months ago
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
Background: When analyzing protein sequences using sequence similarity searches, orthologous sequences (that diverged by speciation) are more reliable predictors of a new protein&...
Christian M. Zmasek, Sean R. Eddy
WWW
2006
ACM
14 years 10 months ago
Optimizing scoring functions and indexes for proximity search in type-annotated corpora
We introduce a new, powerful class of text proximity queries: find an instance of a given "answer type" (person, place, distance) near "selector" tokens matchi...
Soumen Chakrabarti, Kriti Puniyani, Sujatha Das
BMCBI
2006
102views more  BMCBI 2006»
13 years 10 months ago
MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria
Background: A key post genomics challenge is to identify how genes in an organism come together and perform physiological functions. An important first step in this direction is t...
Sarita Ranjan, Ranjit Kumar Gundu, Akash Ranjan
DLOG
2010
13 years 7 months ago
TBox Classification in Parallel: Design and First Evaluation
Abstract. One of the most frequently used inference services of description logic reasoners classifies all named classes of OWL ontologies into a subsumption hierarchy. Due to emer...
Mina Aslani, Volker Haarslev
BPM
2009
Springer
157views Business» more  BPM 2009»
13 years 11 months ago
ProM: The Process Mining Toolkit
Nowadays, all kinds of information systems store detailed information in logs. Examples of such systems include classical workflow management systems (Staffware), ERP systems (SAP)...
Wil M. P. van der Aalst, Boudewijn F. van Dongen, ...