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» Extraction of Structured Programs from Specification Proofs
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STOC
2003
ACM
171views Algorithms» more  STOC 2003»
14 years 9 months ago
Primal-dual meets local search: approximating MST's with nonuniform degree bounds
We present a new bicriteria approximation algorithm for the degree-bounded minimum-cost spanning tree problem: Given an undirected graph with nonnegative edge weights and degree b...
Jochen Könemann, R. Ravi
FPGA
2008
ACM
174views FPGA» more  FPGA 2008»
13 years 10 months ago
Pattern-based behavior synthesis for FPGA resource reduction
Pattern-based synthesis has drawn wide interest from researchers who tried to utilize the regularity in applications for design optimizations. In this paper we present a general p...
Jason Cong, Wei Jiang
BMCBI
2011
13 years 3 months ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
CSB
2003
IEEE
118views Bioinformatics» more  CSB 2003»
14 years 1 months ago
Automated Protein NMR Resonance Assignments
NMR resonance peak assignment is one of the key steps in solving an NMR protein structure. The assignment process links resonance peaks to individual residues of the target protei...
Xiang Wan, Dong Xu, Carolyn M. Slupsky, Guohui Lin
BMCBI
2007
102views more  BMCBI 2007»
13 years 8 months ago
FlexOracle: predicting flexible hinges by identification of stable domains
Background: Protein motions play an essential role in catalysis and protein-ligand interactions, but are difficult to observe directly. A substantial fraction of protein motions i...
Samuel Flores, Mark Gerstein