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BMCBI
2010
135views more  BMCBI 2010»
13 years 10 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
ICNC
2005
Springer
14 years 3 months ago
Local Search for the Maximum Parsimony Problem
Abstract. Four local search algorithms are investigated for the phylogenetic tree reconstruction problem under the Maximum Parsimony criterion. A new subtree swapping neighborhood ...
Adrien Goëffon, Jean-Michel Richer, Jin-Kao H...
CORR
2011
Springer
152views Education» more  CORR 2011»
13 years 5 months ago
Topology Discovery of Sparse Random Graphs With Few Participants
We consider the task of topology discovery of sparse random graphs using end-to-end random measurements (e.g., delay) between a subset of nodes, referred to as the participants. T...
Animashree Anandkumar, Avinatan Hassidim, Jonathan...
ICC
2007
IEEE
137views Communications» more  ICC 2007»
14 years 4 months ago
On the Simulation of Tikhonov Random Processes
Abstract— A novel, simple and efficient method for the generation of Tikhonov (a.k.a. von Mises) random variates is proposed. In the proposed method, circular variates of a pres...
Giuseppe Thadeu Freitas de Abreu
COMPGEOM
2011
ACM
13 years 1 months ago
Minors in random and expanding hypergraphs
We introduce a new notion of minors for simplicial complexes (hypergraphs), so-called homological minors. Our motivation is to propose a general approach to attack certain extrema...
Uli Wagner