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CPHYSICS
2007
96views more  CPHYSICS 2007»
13 years 8 months ago
Simple models for biomembrane structure and dynamics
Simulation of biomembranes over length and time scales relevant to cellular biology is not currently feasible with molecular dynamics including full atomic detail. Barring an unfo...
Frank L. H. Brown
BMCBI
2011
13 years 2 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
BMCBI
2008
102views more  BMCBI 2008»
13 years 8 months ago
Stability of the core domain of p53: insights from computer simulations
: The tumour suppressor protein p53 protein has a core domain that binds DNA and is the site for most oncogenic mutations. This domain is quite unstable compared to its homologs p...
Arumugam Madhumalar, Derek John Smith, Chandra Ver...
JUCS
2010
215views more  JUCS 2010»
13 years 2 months ago
A Multidisciplinary Survey of Computational Techniques for the Modelling, Simulation and Analysis of Biochemical Networks
: All processes of life are controlled by networks of interacting biochemical components. The purpose of modelling these networks is manifold. From a theoretical point of view it a...
James Decraene, Thomas Hinze
JCC
2007
63views more  JCC 2007»
13 years 7 months ago
Quantum correction to the pair distribution function
: We report a numerical technique that allows the quantum effects of zero-point motion to be incorporated into Pair Distribution Functions calculated classically for molecules usin...
V. A. Levashov, S. J. L. Billinge, M. F. Thorpe