112 search results - page 7 / 23 » FPGA-Based Multigrid Computation for Molecular Dynamics Simu... |
ICPP
2006
IEEE
14 years 1 months ago
2006
IEEE
— This paper presents Salsa, a novel, decentralized and asynchronous realization of the “replica exchange” algorithm for simulating the structure, function, folding, and dyna...
ICS
2009
Tsinghua U.
14 years 2 months ago
2009
Tsinghua U.
Molecular Dynamics applications enhance our understanding of biological phenomena through bio-molecular simulations. Large-scale parallelization of MD simulations is challenging b...
FPL
2008
Springer
13 years 9 months ago
2008
Springer
The objective of Molecular Dynamics (MD) simulations is to determine the shape of a molecule in a given biomolecular environment. These simulations are very demanding computationa...
IRREGULAR
1998
Springer
14 years 4 days ago
1998
Springer
To achieve scalable parallel performance in Molecular Dynamics Simulation, we have modeled and implemented several dynamic spatial domain decomposition algorithms. The modeling is ...
VISUALIZATION
2002
IEEE
14 years 25 days ago
2002
IEEE
The bioactivity of a molecule strongly depends on its metastable conformational shapes and the transitions between these. Therefore, conformation analysis and visualization is a b...