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146
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RECOMB
2008
Springer
16 years 2 months ago
A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery
As an increasing number of eukaryotic genomes are being sequenced, comparative studies aimed at detecting regulatory elements in intergenic sequences are becoming more prevalent. M...
Raluca Gordân, Leelavati Narlikar, Alexander...
BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
15 years 4 months ago
On the Role of Local Matching for Efficient Semi-supervised Protein Sequence Classification
Recent studies in protein sequence analysis have leveraged the power of unlabeled data. For example, the profile and mismatch neighborhood kernels have shown significant improveme...
Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic
109
Voted
NIPS
2004
15 years 3 months ago
Sub-Microwatt Analog VLSI Support Vector Machine for Pattern Classification and Sequence Estimation
An analog system-on-chip for kernel-based pattern classification and sequence estimation is presented. State transition probabilities conditioned on input data are generated by an...
Shantanu Chakrabartty, Gert Cauwenberghs
117
Voted
NIPS
2003
15 years 3 months ago
Kernels for Structured Natural Language Data
This paper devises a novel kernel function for structured natural language data. In the field of Natural Language Processing, feature extraction consists of the following two ste...
Jun Suzuki, Yutaka Sasaki, Eisaku Maeda
109
Voted
IDA
2008
Springer
15 years 2 months ago
Transcription factor binding site recognition by regularity matrices based on the natural classification method
A principally new approach to the classifications of nucleotide sequences based on the "natural" classification concept is proposed. As a result of "natural" c...
Eugenii E. Vityaev, K. A. Lapardin, I. V. Khomiche...