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» Family pairwise search with embedded motif models
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BIOINFORMATICS
2004
86views more  BIOINFORMATICS 2004»
13 years 7 months ago
Transposable element annotation of the rice genome
Motivation: The high content of repetitive sequences in the genomes of many higher eukaryotes renders the task of annotating them computationally intensive. Presently, the only wi...
Nikoleta Juretic, Thomas E. Bureau, Richard M. Bru...
BMCBI
2002
108views more  BMCBI 2002»
13 years 7 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
BMCBI
2005
122views more  BMCBI 2005»
13 years 7 months ago
A neural strategy for the inference of SH3 domain-peptide interaction specificity
Background: The SH3 domain family is one of the most representative and widely studied cases of so-called Peptide Recognition Modules (PRM). The polyproline II motif PxxP that gen...
Enrico Ferraro, Allegra Via, Gabriele Ausiello, Ma...
ISM
2008
IEEE
119views Multimedia» more  ISM 2008»
14 years 2 months ago
Using Exact Locality Sensitive Mapping to Group and Detect Audio-Based Cover Songs
Cover song detection is becoming a very hot research topic when plentiful personal music recordings or performance are released on the Internet. A nice cover song recognizer helps...
Yi Yu, J. Stephen Downie, Fabian Mörchen, Lei...
CIKM
2005
Springer
14 years 1 months ago
Query expansion using term relationships in language models for information retrieval
Language Modeling (LM) has been successfully applied to Information Retrieval (IR). However, most of the existing LM approaches only rely on term occurrences in documents, queries...
Jing Bai, Dawei Song, Peter Bruza, Jian-Yun Nie, G...