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» Fast Comparison of Evolutionary Trees
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CEC
2007
IEEE
14 years 1 months ago
Solving multimodal problems via multiobjective techniques with Application to phase equilibrium detection
Abstract— For solving multimodal problems by means of evolutionary algorithms, one often resorts to multistarts or niching methods. The latter approach the question: ‘What is e...
Mike Preuss, Günter Rudolph, Feelly Tumakaka
TCBB
2010
137views more  TCBB 2010»
13 years 5 months ago
Alignments of RNA Structures
— We describe a theoretical unifying framework to express comparison of RNA structures, which we call alignment hierarchy. This framework relies on the definition of common supe...
Guillaume Blin, Alain Denise, Serge Dulucq, Claire...
IPPS
2006
IEEE
14 years 1 months ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...
ALMOB
2008
131views more  ALMOB 2008»
13 years 7 months ago
Fast algorithms for computing sequence distances by exhaustive substring composition
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Alberto Apostolico, Olgert Denas
NIPS
2008
13 years 9 months ago
Automatic online tuning for fast Gaussian summation
Many machine learning algorithms require the summation of Gaussian kernel functions, an expensive operation if implemented straightforwardly. Several methods have been proposed to...
Vlad I. Morariu, Balaji Vasan Srinivasan, Vikas C....