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SIAMSC
2008
131views more  SIAMSC 2008»
13 years 6 months ago
Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
Many important physiological processes operate at time and space scales far beyond those accessible to atom-realistic simulations, and yet discrete stochastic rather than continuum...
Rex A. Kerr, Thomas M. Bartol, Boris Kaminsky, Mar...
JCC
2006
110views more  JCC 2006»
13 years 6 months ago
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm
: This article describes a method for solving the geometric closure problem for simplified models of nucleic acid structures by using the constant bond lengths approximation. The r...
Heinz Sklenar, Daniel Wüstner, Remo Rohs
BMCBI
2007
157views more  BMCBI 2007»
13 years 7 months ago
A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellula
Background: The fundamental role that intrinsic stochasticity plays in cellular functions has been shown via numerous computational and experimental studies. In the face of such e...
Asawari Samant, Babatunde A. Ogunnaike, Dionisios ...
ISBI
2004
IEEE
14 years 7 months ago
Reconstruction of 2D Pet Data with Monte Carlo Generated Natural Pixels
Abstract-In discrete detector PET, natural pixels are image basis functions calculated from responses of detector pairs. By using reconstruction with natural pixels the discretizat...
Charles L. Byrne, Stefaan Vandenberghe, Edward J. ...
SIAMSC
2008
149views more  SIAMSC 2008»
13 years 6 months ago
Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
In systems biology, the stochastic description of biochemical reaction kinetics is increasingly being employed to model gene regulatory networks and signalling pathways. Mathematic...
Peter Deuflhard, Wilhelm Huisinga, T. Jahnke, Mich...