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CSR
2006
Springer
13 years 11 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
NIPS
2008
13 years 9 months ago
Automatic online tuning for fast Gaussian summation
Many machine learning algorithms require the summation of Gaussian kernel functions, an expensive operation if implemented straightforwardly. Several methods have been proposed to...
Vlad I. Morariu, Balaji Vasan Srinivasan, Vikas C....
PRL
2006
96views more  PRL 2006»
13 years 8 months ago
Fast codebook search algorithms based on tree-structured vector quantization
Tree-Structured Vector Quantization (TSVQ) is a highly efficient technique for locating an appropriate codeword for each input vector. The algorithm does not guarantee that the sel...
Chin-Chen Chang, Yu-Chiang Li, Jun-Bin Yeh
ICML
2006
IEEE
14 years 8 months ago
Kernelizing the output of tree-based methods
We extend tree-based methods to the prediction of structured outputs using a kernelization of the algorithm that allows one to grow trees as soon as a kernel can be defined on the...
Florence d'Alché-Buc, Louis Wehenkel, Pierr...
ISQED
2007
IEEE
97views Hardware» more  ISQED 2007»
14 years 2 months ago
Probabilistic Congestion Prediction with Partial Blockages
— Fast and accurate routing congestion estimation is essential for optimizations such as floorplanning, placement, buffering, and physical synthesis that need to avoid routing c...
Zhuo Li, Charles J. Alpert, Stephen T. Quay, Sachi...