372 search results - page 11 / 75 » Fast Protein Structure Alignment |
GCB
2004
Springer
14 years 27 days ago
2004
Springer
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
BIOCOMP
2008
13 years 9 months ago
2008
Protein structure comparison is important for elucidation of evolutionary relationships, function and functionally important amino acid residues. We propose Geometric Invariant bas...
BMCBI
2007
13 years 7 months ago
2007
Background: Proteins that evolve from a common ancestor can change functionality over time, and it is important to be able identify residues that cause this change. In this paper ...
ICML
2007
IEEE
14 years 8 months ago
2007
IEEE
Structural alignments are the most widely used tools for comparing proteins with low sequence similarity. The main contribution of this paper is to derive various kernels on prote...
BMCBI
2008
13 years 7 months ago
2008
Background: Insertions and deletions (indels) represent a common type of sequence variations, which are less studied and pose many important biological questions. Recent research ...