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» Fast Protein Structure Alignment
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ICML
2004
IEEE
14 years 8 months ago
A graphical model for protein secondary structure prediction
In this paper, we present a graphical model for protein secondary structure prediction. This model extends segmental semi-Markov models (SSMM) to exploit multiple sequence alignme...
Wei Chu, Zoubin Ghahramani, David L. Wild
3DPVT
2002
IEEE
121views Visualization» more  3DPVT 2002»
14 years 16 days ago
Analysis of Secondary Structure Elements of Proteins Using Indexing Techniques
In this paper we present a method for protein structure comparison that is based on indexing. Unlike most methods using indexing, ours does not use invariants of the C atoms of th...
Concettina Guerra, Stefano Lonardi, Giuseppe Zanot...
CPM
1993
Springer
154views Combinatorics» more  CPM 1993»
13 years 11 months ago
On Suboptimal Alignments of Biological Sequences
It is widely accepted that the optimal alignment between a pair of proteins or nucleic acid sequences that minimizes the edit distance may not necessarily re ect the correct biolog...
Dalit Naor, Douglas L. Brutlag
ISBRA
2010
Springer
14 years 2 months ago
"Master-Slave" Biological Network Alignment
d abstract), Nicola Ferraro, Luigi Palopoli, Simona Panni and Simona E. Rombo. Uncovering Hidden Phylogenetic Consensus d abstract), Nicholas Pattengale, Krister Swenson and Bernar...
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simo...
BMCBI
2008
62views more  BMCBI 2008»
13 years 7 months ago
A fast structural multiple alignment method for long RNA sequences
Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi ...