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» Fast Structured Motif Search in DNA Sequences
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SIGPRO
2008
104views more  SIGPRO 2008»
13 years 7 months ago
Macromolecular sequence analysis using multiwindow Gabor representations
Multiwindow Gabor representations highlight fingerprints suitable for indexing of macromolecules, based on their local periodic structures. This paper presents a technique for ana...
Nagesh K. Subbanna, Yehoshua Y. Zeevi
BMCBI
2006
102views more  BMCBI 2006»
13 years 7 months ago
MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria
Background: A key post genomics challenge is to identify how genes in an organism come together and perform physiological functions. An important first step in this direction is t...
Sarita Ranjan, Ranjit Kumar Gundu, Akash Ranjan
SDM
2009
SIAM
161views Data Mining» more  SDM 2009»
14 years 4 months ago
Polynomial-Delay and Polynomial-Space Algorithms for Mining Closed Sequences, Graphs, and Pictures in Accessible Set Systems.
In this paper, we study efficient closed pattern mining in a general framework of set systems, which are families of subsets ordered by set-inclusion with a certain structure, pro...
Hiroki Arimura, Takeaki Uno
WABI
2007
Springer
102views Bioinformatics» more  WABI 2007»
14 years 1 months ago
Homology Search with Fragmented Nucleic Acid Sequence Patterns
The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
Axel Mosig, Julian J.-L. Chen, Peter F. Stadler
BMCBI
2008
118views more  BMCBI 2008»
13 years 7 months ago
PseudoGeneQuest - Service for identification of different pseudogene types in the human genome
Background: Pseudogenes, nonfunctional copies of genes, evolve fast due the lack of evolutionary pressures and thus appear in several different forms. PseudoGeneQuest is an online...
Csaba P. Ortutay, Mauno Vihinen