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FCCM
2011
IEEE
311views VLSI» more  FCCM 2011»
12 years 11 months ago
String Matching in Hardware Using the FM-Index
—String matching is a ubiquitous problem that arises in a wide range of applications in computing, e.g., packet routing, intrusion detection, web querying, and genome analysis. D...
Edward Fernandez, Walid Najjar, Stefano Lonardi
BMCBI
2007
226views more  BMCBI 2007»
13 years 7 months ago
MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans
Background: MicroRNAs (miRNAs) are recognized as one of the most important families of noncoding RNAs that serve as important sequence-specific post-transcriptional regulators of ...
Ting-Hua Huang, Bin Fan, Max F. Rothschild, Zhi-Li...
ADC
2007
Springer
183views Database» more  ADC 2007»
13 years 11 months ago
Efficient Similarity Search by Summarization in Large Video Database
With the explosion of video data, video processing technologies have advanced quickly and been applied into many fields, such as advertisements, medical etc.. To fast search these...
Xiangmin Zhou, Xiaofang Zhou, Heng Tao Shen
CP
2003
Springer
14 years 24 days ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
ALGORITHMICA
2005
108views more  ALGORITHMICA 2005»
13 years 7 months ago
Key-Independent Optimality
A new form of optimality for comparison based static dictionaries is introduced. This type of optimality, keyindependent optimality, is motivated by applications that assign key v...
John Iacono