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IPPS
2009
IEEE
14 years 3 months ago
Building a parallel pipelined external memory algorithm library
Large and fast hard disks for little money have enabled the processing of huge amounts of data on a single machine. For this purpose, the well-established STXXL library provides a...
Andreas Beckmann, Roman Dementiev, Johannes Single...
ISBI
2008
IEEE
14 years 9 months ago
Multi-resolution parallel integral projection for fast localization of a straight electrode in 3D ultrasound images
We address the problem of fast and accurate localization of miniature surgical instruments like needles or electrodes using 3D ultrasound (US). An algorithm based on maximizing a ...
Christian Cachard, Hervé Liebgott, Jan Kybi...
IPPS
2002
IEEE
14 years 1 months ago
A Prototypical Self-Optimizing Package for Parallel Implementation of Fast Signal Transforms
This paper presents a self-adapting parallel package for computing the Walsh-Hadamard transform (WHT), a prototypical fast signal transform, similar to the fast Fourier transform....
Kang Chen, Jeremy R. Johnson
ICPP
2009
IEEE
14 years 3 months ago
LeWI: A Runtime Balancing Algorithm for Nested Parallelism
Abstract—We present LeWI: a novel load balancing algorithm, that can balance applications with very different patterns of imbalance. Our algorithm can balance fine grain imbalan...
Marta Garcia, Julita Corbalán, Jesús...
BMCBI
2011
13 years 3 months ago
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell