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SASP
2009
IEEE
291views Hardware» more  SASP 2009»
14 years 4 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
INFOCOM
2009
IEEE
14 years 4 months ago
Adaptive Early Packet Filtering for Defending Firewalls Against DoS Attacks
—A major threat to data networks is based on the fact that some traffic can be expensive to classify and filter as it will undergo a longer than average list of filtering rule...
Adel El-Atawy, Ehab Al-Shaer, Tung Tran, Raouf Bou...
IPPS
2009
IEEE
14 years 4 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
IPPS
2009
IEEE
14 years 4 months ago
Dynamic iterations for the solution of ordinary differential equations on multicore processors
In the past few years, there has been a trend of providing increased computing power through greater number of cores on a chip, rather than through higher clock speeds. In order t...
Yanan Yu, Ashok Srinivasan
IPPS
2009
IEEE
14 years 4 months ago
Coupled placement in modern data centers
We introduce the coupled placement problem for modern data centers spanning placement of application computation and data among available server and storage resources. While the t...
Madhukar R. Korupolu, Aameek Singh, Bhuvan Bamba