SASP 2009 - PDF Preprint Papers

SASP 2009 Symposium on Application Specific Processors

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SASP
2009
IEEE

291views Hardware» more SASP 2009»

A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs

14 years 6 months ago

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—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...

Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada

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