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» Finding Approximate Repeating Patterns from Sequence Data
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DASFAA
2006
IEEE
126views Database» more  DASFAA 2006»
14 years 1 months ago
An Efficient Approach for Mining Top-K Fault-Tolerant Repeating Patterns
Abstract. In this paper, an efficient strategy for mining top-K non-trivial faulttolerant repeating patterns (FT-RPs in short) with lengths no less than min_len from data sequences...
Jia-Ling Koh, Yu-Ting Kung
BIOCOMP
2006
13 years 8 months ago
Filtering Tandem Repeats in DNA Sequences
A tandem repeat is a sequence of two or more contiguous, approximate copies of a pattern. Tandem repeats occur in the genomes of both eukaryotic and prokaryotic organisms. They ar...
Dina Sokol, Justin Tojeira
EVOW
2010
Springer
13 years 5 months ago
Finding Gapped Motifs by a Novel Evolutionary Algorithm
Background: Identifying approximately repeated patterns, or motifs, in DNA sequences from a set of co-regulated genes is an important step towards deciphering the complex gene reg...
Chengwei Lei, Jianhua Ruan
BMCBI
2007
139views more  BMCBI 2007»
13 years 7 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
CORR
2010
Springer
112views Education» more  CORR 2010»
13 years 7 months ago
On Finding Frequent Patterns in Event Sequences
Given a directed acyclic graph with labeled vertices, we consider the problem of finding the most common label sequences ("traces") among all paths in the graph (of some...
Andrea Campagna, Rasmus Pagh