Sciweavers

362 search results - page 7 / 73
» Finding Motifs with Gaps
Sort
View
PSB
2004
13 years 8 months ago
Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures
ct The preferential conservation of transcription factor binding sites implies that non-coding sequence data from related species will prove a powerful asset to motif discovery. We...
Alan M. Moses, Derek Y. Chiang, Michael B. Eisen
RECOMB
2004
Springer
14 years 7 months ago
Multiple organism gene finding by collapsed gibbs sampling
The Gibbs sampling method has been widely used for sequence analysis after it was successfully applied to the problem of identifying regulatory motif sequences upstream of genes. ...
Sourav Chatterji, Lior Pachter
KDD
2003
ACM
146views Data Mining» more  KDD 2003»
14 years 7 months ago
Probabilistic discovery of time series motifs
Several important time series data mining problems reduce to the core task of finding approximately repeated subsequences in a longer time series. In an earlier work, we formalize...
Bill Yuan-chi Chiu, Eamonn J. Keogh, Stefano Lonar...
ICML
2005
IEEE
14 years 8 months ago
New kernels for protein structural motif discovery and function classification
We present new, general-purpose kernels for protein structure analysis, and describe how to apply them to structural motif discovery and function classification. Experiments show ...
Chang Wang, Stephen D. Scott
GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
14 years 1 months ago
The evolutionary computation approach to motif discovery in biological sequences
Finding motifs — patterns of conserved residues — within nucleotide and protein sequences is a key part of understanding function and regulation within biological systems. Thi...
Michael A. Lones, Andrew M. Tyrrell