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» Finding Patterns in Given Intervals
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JCB
2007
108views more  JCB 2007»
13 years 8 months ago
A Dynamic Programming Approach for Finding Common Patterns in RNAs
We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
Sven Siebert, Rolf Backofen
DIS
2004
Springer
14 years 1 months ago
Finding Optimal Pairs of Cooperative and Competing Patterns with Bounded Distance
We consider the problem of discovering the optimal pair of substring patterns with bounded distance α, from a given set S of strings. We study two kinds of pattern classes, one is...
Shunsuke Inenaga, Hideo Bannai, Heikki Hyyrö,...
SYRCODIS
2007
99views Database» more  SYRCODIS 2007»
13 years 9 months ago
Association Rules Discovery in Multivariate Time Series
A problem of association rules discovery in a multivariate time series is considered in this paper. A method for finding interpretable association rules between frequent qualitati...
Elena Lutsiv
CPM
2006
Springer
107views Combinatorics» more  CPM 2006»
14 years 3 days ago
Tiling an Interval of the Discrete Line
We consider the problem of tiling a segment {0, . . . , n} of the discrete line. More precisely, we ought to characterize the structure of the patterns that tile a segment and thei...
Olivier Bodini, Eric Rivals
BCB
2010
161views Bioinformatics» more  BCB 2010»
13 years 3 months ago
Genome-wide compatible SNP intervals and their properties
Recent studies suggest that the mammalian genomes can be subdivided in segments within which there is limited haplotype diversity. Understanding the distribution and structure of ...
Jeremy W. Wang, Kyle J. Moore, Qi Zhang, Fernando ...