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» Finding Similar Patterns in Microarray Data
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BMCBI
2010
132views more  BMCBI 2010»
13 years 10 months ago
Consistency, comprehensiveness, and compatibility of pathway databases
Background: It is necessary to analyze microarray experiments together with biological information to make better biological inferences. We investigate the adequacy of current bio...
Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
BMCBI
2007
135views more  BMCBI 2007»
13 years 10 months ago
Detecting multivariate differentially expressed genes
Background: Gene expression is governed by complex networks, and differences in expression patterns between distinct biological conditions may therefore be complex and multivariat...
Roland Nilsson, José M. Peña, Johan ...
CIKM
2008
Springer
13 years 11 months ago
On effective presentation of graph patterns: a structural representative approach
In the past, quite a few fast algorithms have been developed to mine frequent patterns over graph data, with the large spectrum covering many variants of the problem. However, the...
Chen Chen, Cindy Xide Lin, Xifeng Yan, Jiawei Han
BMCBI
2010
172views more  BMCBI 2010»
13 years 10 months ago
Inferring gene regression networks with model trees
Background: Novel strategies are required in order to handle the huge amount of data produced by microarray technologies. To infer gene regulatory networks, the first step is to f...
Isabel A. Nepomuceno-Chamorro, Jesús S. Agu...
NAR
2006
83views more  NAR 2006»
13 years 9 months ago
KOBAS server: a web-based platform for automated annotation and pathway identification
There is an increasing need to automatically annotate a set of genes or proteins (from genome sequencing, DNA microarray analysis or protein 2D gel experiments) using controlled v...
Jianmin Wu, Xizeng Mao, Tao Cai, Jingchu Luo, Lipi...