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» Finding Similar Patterns in Microarray Data
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BMCBI
2005
103views more  BMCBI 2005»
13 years 9 months ago
Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments
Background: Cluster analyses are used to analyze microarray time-course data for gene discovery and pattern recognition. However, in general, these methods do not take advantage o...
Hua Liu, Sergey Tarima, Aaron S. Borders, Thomas V...
INCDM
2010
Springer
486views Data Mining» more  INCDM 2010»
13 years 11 months ago
Finding Temporal Patterns in Noisy Longitudinal Data: A Study in Diabetic Retinopathy
This paper describes an approach to temporal pattern mining using the concept of user de ned temporal prototypes to de ne the nature of the trends of interests. The temporal patt...
Vassiliki Somaraki, Deborah Broadbent, Frans Coene...
BMCBI
2008
148views more  BMCBI 2008»
13 years 10 months ago
Discovering biclusters in gene expression data based on high-dimensional linear geometries
Background: In DNA microarray experiments, discovering groups of genes that share similar transcriptional characteristics is instrumental in functional annotation, tissue classifi...
Xiangchao Gan, Alan Wee-Chung Liew, Hong Yan
RECOMB
2002
Springer
14 years 10 months ago
Phase-independent rhythmic analysis of genome-wide expression patterns
We introduce a model-based analysis technique for extracting and characterizing rhythmic expression pro les from genome-wide DNA microarray hybridization data. These patterns are ...
Christopher James Langmead, Anthony K. Yan, C. Rob...
WABI
2004
Springer
14 years 3 months ago
Finding Optimal Pairs of Patterns
We consider the problem of finding the optimal pair of string patterns for discriminating between two sets of strings, i.e. finding the pair of patterns that is best with respect...
Hideo Bannai, Heikki Hyyrö, Ayumi Shinohara, ...